STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_0283Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: reh:H16_B1996 transcriptional regulator, AraC- family. (246 aa)    
Predicted Functional Partners:
Snas_0282
PFAM: major facilitator superfamily MFS_1; KEGG: cco:CCC13826_0670 ProP protein.
 
     0.905
Snas_0965
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; SMART: regulatory protein GntR HTH; KEGG: pfo:Pfl01_3164 GntR family transcriptional regulator.
 
    0.623
Snas_0284
PFAM: glycoside hydrolase family 16; KEGG: mxa:MXAN_6550 glycosy hydrolase family protein.
       0.618
Snas_0285
PFAM: peptidase M24; creatinase; KEGG: sit:TM1040_2712 peptidase M24.
  
  
 0.601
Snas_3409
TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: bav:BAV0190 lysine export transcriptional regulator.
   
  
 0.601
Snas_4491
TIGRFAM: cytidyltransferase-related domain protein; KEGG: pmy:Pmen_1542 ATPase/kinase involved in NAD metabolism-like protein.
   
    0.598
Snas_6386
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: hypothetical protein.
   
    0.590
Snas_3001
Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sme:SM_b21464 putative transcriptional regulator, GntR family protein.
  
    0.553
Snas_5635
Transcriptional regulator, GntR family; PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: bpa:BPP0928 GntR family transcriptional regulator.
  
    0.553
Snas_6130
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: pfs:PFLU2959 AraC-family transcriptional regulator.
  
   0.542
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.