STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_0809Xylanase; KEGG: smt:Smal_2906 xylanase. (262 aa)    
Predicted Functional Partners:
Snas_0188
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: pfl:PFL_2147 nonribosomal peptide synthetase.
  
 
 0.899
Snas_0810
KEGG: pol:Bpro_1717 hypothetical protein.
       0.732
Snas_2650
KEGG: psa:PST_0143 3-carboxymuconate cyclase.
  
     0.607
Snas_1279
NADH-quinone oxidoreductase, F subunit; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.
    
   0.593
Snas_1278
TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: NADH-ubiquinone oxidoreductase 24 kda subunit; K03943 NADH dehydrogenase (ubiquinone) flavoprotein 2.
    
   0.575
Snas_3011
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
     0.567
Snas_4133
PFAM: Acyl transferase; Beta-ketoacyl synthase; Erythronolide synthase docking; Thioesterase; phosphopantetheine-binding; KEGG: eca:ECA0603 type I polyketide synthase.
  
 
 0.559
Snas_1803
Hypothetical protein; KEGG: cja:CJA_2657 carbohydrate binding protein, putative, cbp32B.
  
     0.551
Snas_4118
PFAM: Rieske [2Fe-2S] domain protein; KEGG: vei:Veis_4950 Rieske (2Fe-2S) domain- containing protein.
    
   0.541
Snas_0808
PFAM: GCN5-related N-acetyltransferase; KEGG: eca:ECA3012 acetyltransferase.
       0.538
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.