STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_0853Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; NB-ARC domain protein; transcriptional regulator domain protein; SMART: Tetratricopeptide domain protein; KEGG: reh:H16_A1278 ATP-dependent transcriptional regulator containing adenylate cyclase related domains. (1010 aa)    
Predicted Functional Partners:
Snas_3482
KEGG: afw:Anae109_3667 ATPase-like protein.
 
    0.752
Snas_0852
KEGG: pna:Pnap_4852 hypothetical protein.
 
     0.617
Snas_3572
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: ret:RHE_PF00532 LuxR family transcriptional regulator.
 
    0.587
Snas_2412
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: hypothetical protein.
 
     0.571
Snas_0851
Hypothetical protein.
       0.559
Snas_3216
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: bbt:BBta_1892 transcriptional regulator.
 
    0.544
Snas_6225
Putative adenylate/guanylate cyclase; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; KEGG: mxa:MXAN_6114 adenylate/guanylate cyclase domain-containing protein.
 
    0.540
Snas_1147
PFAM: protein of unknown function DUF742.
  
     0.527
Snas_3591
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: hypothetical LOC574629; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; TPR repeat- containing protein; SMART: Tetratricopeptide domain protein.
 
    0.502
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.479
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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