STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_0978PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cak:Caul_2577 glyoxalase/bleomycin resistance protein/dioxygenase. (127 aa)    
Predicted Functional Partners:
Snas_0979
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: acp:A2cp1_3403 RNA polymerase, sigma-24 subunit, ECF subfamily.
 
     0.812
Snas_4775
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dac:Daci_5811 glyoxalase/bleomycin resistance protein/dioxygenase.
  
     0.625
Snas_0980
Hypothetical protein.
 
     0.586
Snas_3218
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cti:RALTA_B0885 putative lyase.
  
     0.547
Snas_0977
KEGG: cps:CPS_2160 hypothetical protein.
       0.488
Snas_2717
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: sme:SMc01122 hypothetical protein.
  
     0.464
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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