STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Snas_1007PFAM: glycosyl transferase group 1; KEGG: smd:Smed_4583 glycosyl transferase group 1. (669 aa)    
Predicted Functional Partners:
Snas_0745
PFAM: CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase; glycosyl transferase family 2; KEGG: ppr:PBPRA2712 teichoic acid biosynthesis protein F.
 
  
 0.712
Snas_1006
KEGG: afw:Anae109_4193 hypothetical protein.
     
 0.623
Snas_1293
KEGG: afw:Anae109_1412 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.598
Snas_6387
KEGG: acp:A2cp1_1500 exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.579
Snas_4386
PFAM: UvrD/REP helicase; HRDC domain protein; SMART: HRDC domain protein; KEGG: acp:A2cp1_0115 UvrD/REP helicase.
    
 
 0.510
Snas_0945
PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: ara:Arad_4162 polysaccharide biosynthesis associated protein.
 
  
 0.486
Snas_5671
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: scl:sce2797 hypothetical protein; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.486
Snas_0791
PFAM: protein of unknown function DUF88; KEGG: rhi:NGR234_267 Y4oD.
  
 
   0.475
Snas_4876
PFAM: glycosyl transferase group 1; KEGG: pat:Patl_1191 glycosyl transferase, group 1.
  
     0.475
Snas_0948
Hypothetical protein; KEGG: pmy:Pmen_2781 anion transporter.
 
  
 0.472
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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