STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_1036PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: avi:Avi_0504 ABC transporter substrate binding protein (proline/glycine/betaine). (339 aa)    
Predicted Functional Partners:
Snas_1034
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: kpe:KPK_2011 quaternary amine uptake ABC transporter (QAT) family, permease protein.
 
 
 0.993
Snas_1035
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: avi:Avi_0503 ABC transporter.
 
 
 0.993
Snas_1033
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rle:pRL120755 putative ATP-binding component of ABC transporter.
 
 0.990
Snas_5180
KEGG: csa:Csal_2354 glycine betaine/L-proline transport ATP binding subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; CBS domain containing protein; SMART: AAA ATPase.
 
 0.973
Snas_5181
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sea:SeAg_B1680 binding-protein-dependent transport systems inner membrane component.
 
 
 0.917
Snas_5179
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_2912 binding-protein-dependent transport systems inner membrane component.
 
 
 0.916
Snas_5178
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: dat:HRM2_29620 ABC-type glycine betaine/proline transport system, periplasmic glycine betaine/proline-binding protein.
     
  0.900
Snas_1804
Hypothetical protein.
  
    0.620
Snas_4522
KEGG: hypothetical protein.
  
     0.472
Snas_2396
PFAM: Substrate-binding region of ABC-type glycine betaine transport system; KEGG: sil:SPO1548 glycine betaine/proline ABC transporter, periplasmic substrate-binding protein.
   
 
 0.462
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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