STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_1140KEGG: gbm:Gbem_2440 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. (337 aa)    
Predicted Functional Partners:
Snas_3510
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll7245 ABC transporter permease protein.
    0.978
Snas_3198
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr6084 ABC transporter, permease.
    0.975
Snas_1138
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PE00330 putative peptide ABC transporter, permease protein.
    0.972
Snas_1137
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hch:HCH_06903 ABC-type dipeptide/oligopeptide/nickel transport system, permease components.
   0.958
Snas_6151
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1183 putative permease of ABC transporter.
    0.945
Snas_2621
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sit:TM1040_2743 binding-protein-dependent transport systems inner membrane component.
    0.943
Snas_4142
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gbm:Gbem_2642 binding-protein-dependent transport systems inner membrane component.
    0.942
Snas_5514
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gur:Gura_2052 binding-protein-dependent transport systems inner membrane component.
    0.928
Snas_5511
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gme:Gmet_1236 binding-protein dependent transport system inner membrane protein.
    0.914
Snas_1142
PFAM: extracellular solute-binding protein family 5; KEGG: scl:sce8424 ABC-type dipeptide transport system, periplasmic component.
 
    0.892
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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