STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_1268PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: pmy:Pmen_0972 NADH:flavin oxidoreductase/NADH oxidase. (371 aa)    
Predicted Functional Partners:
Snas_2834
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: succinate dehydrogenase/fumarate reductase, flavoprotein subunit.
      0.611
Snas_5518
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; KEGG: bcm:Bcenmc03_3592 succinate dehydrogenase flavoprotein subunit.
      0.543
Snas_1269
PFAM: beta-lactamase domain protein; KEGG: scl:sce5265 Beta-lactamase.
  
    0.534
Snas_1267
KEGG: rme:Rmet_4616 hypothetical protein.
       0.532
Snas_1270
KEGG: rle:pRL120655 hypothetical protein.
       0.494
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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