STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_1568PFAM: 6-phosphogluconate dehydrogenase NAD-binding; NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Ketopantoate reductase ApbA/PanE domain protein; KEGG: smd:Smed_2232 6-phosphogluconate dehydrogenase NAD-binding. (293 aa)    
Predicted Functional Partners:
Snas_1569
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: ppd:Ppro_1805 cobalamin (vitamin B12) biosynthesis CbiM protein.
       0.505
Snas_1570
KEGG: gme:Gmet_2441 cobalamin (vitamin B12) biosynthesis CbiM protein.
       0.505
Snas_1571
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: gme:Gmet_2440 cobalt ABC transporter CbiQ, permease subunit.
       0.505
Snas_1572
KEGG: gur:Gura_2760 cobalt ABC transporter, ATPase subunit; TIGRFAM: cobalt ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.505
Snas_1567
KEGG: bra:BRADO2406 hypothetical protein.
       0.467
Snas_2322
KEGG: spe:Spro_2504 4-carboxymuconolactone decarboxylase; TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase.
  
    0.447
Snas_2546
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: mpo:Mpop_4719 hydroxypyruvate isomerase; Belongs to the hyi family.
 
  
 0.428
Snas_0256
KEGG: hypothetical protein.
  
     0.426
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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