STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_1621PFAM: HpcH/HpaI aldolase; KEGG: ade:Adeh_0181 citryl-CoA lyase; Belongs to the HpcH/HpaI aldolase family. (362 aa)    
Predicted Functional Partners:
Snas_1620
Formyl-CoA transferase; PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: bpd:BURPS668_A3030 CaiB/BaiF family protein; Belongs to the CoA-transferase III family.
 
  
 0.950
Snas_1553
PFAM: class II aldolase/adducin family protein; KEGG: rhi:NGR_c06110 putative L-fuculose-phosphate aldolase protein.
   
    0.755
Snas_2887
PFAM: class II aldolase/adducin family protein; KEGG: ecz:ECS88_4784 L-ribulose 5-phosphate 4- epimerase.
   
    0.755
Snas_4066
PFAM: class II aldolase/adducin family protein; KEGG: pca:Pcar_3030 L-fuculose-1-phosphate aldolase.
   
    0.755
Snas_1622
PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: xau:Xaut_1536 TRAP C4-dicarboxylate transport system permease DctM subunit.
 
   
 0.752
Snas_6383
Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.655
Snas_2295
PFAM: ADP-ribosylation/Crystallin J1; KEGG: oan:Oant_4445 ADP-ribosylation/crystallin J1.
 
     0.640
purD
KEGG: ccs:CCNA_00299 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; protein of unknown function DUF201; Belongs to the GARS family.
     
 0.633
Snas_1619
Transcriptional regulator, GntR family; PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: azc:AZC_2444 transcriptional regulator.
 
     0.631
Snas_1844
PFAM: protein of unknown function DUF58; KEGG: mxa:MXAN_4679 hypothetical protein.
      
 0.622
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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