STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_1678PFAM: isochorismatase hydrolase; KEGG: bph:Bphy_0542 isochorismatase hydrolase. (166 aa)    
Predicted Functional Partners:
Snas_1679
KEGG: bav:BAV2959 transcriptional regulator.
 
    0.789
Snas_5247
PFAM: isochorismatase hydrolase; KEGG: mpt:Mpe_A0675 putative isochorismatase.
  
     0.732
Snas_0489
PFAM: isochorismatase hydrolase; KEGG: cvi:CV_4239 amidase.
  
     0.724
Snas_4372
PFAM: isochorismatase hydrolase; KEGG: ara:Arad_0458 isochorismatase protein.
  
     0.696
Snas_1680
Transcriptional regulator, AraC family; PFAM: ThiJ/PfpI domain protein; helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: scl:sce6302 AraC family transcriptional regulator.
  
    0.572
Snas_4517
PFAM: isochorismatase hydrolase; phosphopantetheine- binding; KEGG: spe:Spro_3419 isochorismatase.
  
   
 0.508
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. In the C-terminal section; belongs to the NnrD/CARKD family.
   
    0.459
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.438
Snas_5058
PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: bmj:BMULJ_04352 D-galactonate transporter.
  
    0.433
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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