STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_1868PFAM: Peptidase M23; KEGG: rsq:Rsph17025_1853 peptidase M23B. (398 aa)    
Predicted Functional Partners:
Snas_0487
PFAM: Peptidase M23; KEGG: maq:Maqu_2444 peptidase M23B.
  
   
 0.871
Snas_1867
Protein of unknown function DUF214; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.855
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
   
 0.778
Snas_4707
PFAM: Peptidase M23; KEGG: vvy:VV0703 membrane protein.
 
     0.767
Snas_6024
PFAM: Peptidase M23; KEGG: tcx:Tcr_0798 peptidase M23B.
  
     0.760
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.730
Snas_4664
PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: reu:Reut_A3136 penicillin-binding protein 1A.
  
     0.715
Snas_1056
Peptidoglycan glycosyltransferase; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: sat:SYN_00304 multimodular transpeptidase- transglycosylase.
  
     0.702
Snas_5713
Peptidoglycan glycosyltransferase; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: sat:SYN_00304 multimodular transpeptidase- transglycosylase.
  
   
 0.693
Snas_2691
PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: met:M446_6778 1A family penicillin-binding protein.
  
     0.618
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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