STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_1906PFAM: transcriptional coactivator/pterin dehydratase; KEGG: oca:OCAR_4303 pterin-4-alpha-carbinolamine dehydratase (PHS). (218 aa)    
Predicted Functional Partners:
Snas_1905
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: msl:Msil_0872 alcohol dehydrogenase GroES domain protein.
       0.689
Snas_1907
PFAM: Domain of unknown function DUF1801; KEGG: nha:Nham_3358 hypothetical protein.
       0.658
Snas_6468
PFAM: homogentisate 12-dioxygenase; KEGG: sdn:Sden_2162 homogentisate 1,2-dioxygenase.
  
  
 0.507
Snas_3591
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: hypothetical LOC574629; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; TPR repeat- containing protein; SMART: Tetratricopeptide domain protein.
 
   0.492
Snas_1904
PFAM: bifunctional deaminase-reductase domain protein; KEGG: afw:Anae109_3251 deaminase-reductase domain- containing protein.
     
 0.490
Snas_1908
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: oan:Oant_2127 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
       0.478
menB
Enoyl-CoA hydratase/isomerase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily.
  
    0.473
Snas_1909
PFAM: Amidase; KEGG: hha:Hhal_1975 amidase; Belongs to the amidase family.
 
     0.460
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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