STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_1933N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD; PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: mxa:MXAN_0345 putative N-acetylmuramoyl-L- alanine amidase. (330 aa)    
Predicted Functional Partners:
Snas_1435
Hypothetical protein.
 
     0.734
Snas_1832
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: mxa:MXAN_0560 penicillin-resistant dd- carboxypeptidase.
 
      0.705
Snas_6227
PFAM: protein of unknown function DUF187; KEGG: bte:BTH_I2393 FenI protein.
     0.652
Snas_1934
Hypothetical protein.
       0.584
Snas_1935
KEGG: sde:Sde_3467 regulatory protein, LuxR.
       0.584
Snas_1406
PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: pzu:PHZ_c3042 hypothetical protein.
  
     0.577
Snas_1932
PFAM: ROK family protein; KEGG: avi:Avi_5412 transcriptional regulator ROK family.
       0.519
Snas_4920
PFAM: Acetamidase/Formamidase; KEGG: azc:AZC_3884 acetamidase.
 
     0.465
Snas_2373
PFAM: GCN5-related N-acetyltransferase.
  
    0.455
Snas_3107
PFAM: Peptidase M23; KEGG: rpe:RPE_2975 peptidase M23B.
 
     0.422
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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