STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_1940KEGG: hch:HCH_02795 hypothetical protein. (266 aa)    
Predicted Functional Partners:
Snas_1941
Cellulase; PFAM: glycoside hydrolase family 5; KEGG: eca:ECA1981 endoglucanase V; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
       0.773
Snas_1939
PFAM: ROK family protein; KEGG: rle:RL1655 ROK family transcriptional regulator.
       0.671
Snas_1942
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; KEGG: ara:Arad_8018 anaerobic dehydrogenase protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.454
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.