STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_2002Hypothetical protein. (277 aa)    
Predicted Functional Partners:
Snas_3192
Transcriptional regulator, AraC family; PFAM: Ada metal-binding domain protein; AlkA domain protein; HhH-GPD family protein; helix-turn-helix- domain containing protein AraC type; SMART: HhH-GPD family protein; helix-turn-helix- domain containing protein AraC type; KEGG: pzu:PHZ_c2256 transcriptional regulator, AraC family.
    
 0.906
Snas_2950
SMART: HhH-GPD family protein; KEGG: pla:Plav_0044 Ada metal-binding domain- containing protein.
     
  0.900
Snas_4386
PFAM: UvrD/REP helicase; HRDC domain protein; SMART: HRDC domain protein; KEGG: acp:A2cp1_0115 UvrD/REP helicase.
   
 
 0.506
Snas_2001
Hypothetical protein.
       0.500
Snas_2000
Hypothetical protein.
       0.479
Snas_6413
Apurinic endonuclease Apn1; KEGG: pca:Pcar_3071 endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2.
    
 
 0.478
Snas_2241
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: hypothetical protein.
   
 0.473
Snas_3225
Exodeoxyribonuclease III Xth; KEGG: bcj:BCAL0487 endonuclease/exonuclease/phosphatase family protein; TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase.
   
 0.473
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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