STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_2005Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: vfi:VF_B0018 DNA-binding protein RdgA. (388 aa)    
Predicted Functional Partners:
Snas_2006
PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: hypothetical protein.
 
     0.922
Snas_6296
TIGRFAM: HipA N-terminal domain protein; PFAM: HipA domain protein; KEGG: mes:Meso_0511 HipA-like.
   
 
 0.869
Snas_2879
KEGG: rec:RHECIAT_CH0001164 hypothetical protein.
  
     0.654
Snas_3276
KEGG: dps:DP0608 hypothetical protein.
  
     0.546
Snas_2004
Hypothetical protein.
       0.541
Snas_5086
Hypothetical protein; KEGG: mno:Mnod_6876 hemolysin-type calcium-binding region.
  
     0.534
Snas_1516
PFAM: aminoglycoside phosphotransferase; KEGG: pzu:PHZ_c1920 hypothetical protein.
  
     0.522
Snas_1579
PFAM: histidine triad (HIT) protein; KEGG: rle:pRL120657 HIT motif-containing protein.
  
     0.513
Snas_3580
Hypothetical protein; KEGG: mxa:MXAN_7018 CRISPR-associated RAMP Csd1 family protein.
  
     0.487
Snas_2737
PFAM: glycoside hydrolase family 37; KEGG: swp:swp_5044 lipoprotein, putative.
  
     0.481
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.