STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_2016KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 18 family. (313 aa)    
Predicted Functional Partners:
Snas_2013
PFAM: extracellular solute-binding protein family 1; KEGG: cvi:CV_0262 sugar ABC transporter periplasmic protein.
 
     0.773
Snas_2627
KEGG: hypothetical protein.
  
     0.765
Snas_2014
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cvi:CV_0261 sugar ABC transporter permease protein.
 
     0.750
Snas_2015
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cvi:CV_0260 sugar ABC transporter permease.
       0.718
Snas_1891
KEGG: hypothetical protein.
  
     0.636
Snas_0401
KEGG: ilo:IL1495 hypothetical protein.
  
     0.538
Snas_5888
KEGG: mlo:mlr2181 hypothetical protein.
  
     0.528
Snas_2011
Hypothetical protein; KEGG: scl:sce0661 Mannan endo-1,4-beta-mannosidase.
 
     0.525
Snas_1945
PFAM: Platelet-activating factor acetylhydrolase plasma/intracellular isoform II; KEGG: scl:sce0157 hypothetical protein.
  
    0.523
Snas_2127
KEGG: mlo:mlr2181 hypothetical protein.
  
     0.510
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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