STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_2047PFAM: periplasmic solute binding protein; KEGG: gsu:GSU2986 adhesion lipoprotein; Belongs to the bacterial solute-binding protein 9 family. (311 aa)    
Predicted Functional Partners:
Snas_2048
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ppd:Ppro_2138 ABC transporter related.
 
 
 0.997
Snas_2049
PFAM: ABC-3 protein; KEGG: gme:Gmet_0493 hypothetical protein.
 
 
 0.997
Snas_6286
PFAM: ABC-3 protein; KEGG: hha:Hhal_2174 ABC-3 protein.
  
 0.950
Snas_6287
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lhk:LHK_01188 FecE.
 
  
 0.894
Snas_3371
PFAM: cobalamin synthesis CobW domain protein; KEGG: rme:Rmet_1098 cobalamin synthesis protein, P47K.
  
  
 0.749
rpmB-2
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: bav:BAV2485 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.694
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
  
 0.550
Snas_2050
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: pla:Plav_2471 regulatory protein ArsR.
       0.509
Snas_2044
PFAM: cobalt transport protein; KEGG: bcs:BCAN_A1394 cobalt ABC transporter, permease protein CbiQ.
     
 0.498
Snas_2045
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dal:Dalk_4065 ABC transporter related.
       0.465
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.