STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_2099KEGG: bur:Bcep18194_C7498 hypothetical protein. (132 aa)    
Predicted Functional Partners:
Snas_2098
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mlo:mll4384 hypothetical protein.
       0.590
Snas_0870
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: scl:sce2340 ArsR family transcriptional regulator.
  
     0.529
Snas_3833
PFAM: protein of unknown function DUF1212; KEGG: mxa:MXAN_1583 hypothetical protein.
  
     0.486
Snas_1267
KEGG: rme:Rmet_4616 hypothetical protein.
  
     0.452
Snas_4781
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: scl:sce7023 TetR family transcriptional regulator.
  
     0.449
Snas_2955
PFAM: acid phosphatase (Class B); KEGG: lpf:lpl2544 hypothetical protein.
  
     0.438
Snas_4369
PFAM: PfkB domain protein; KEGG: hch:HCH_06560 ribokinase family sugar kinase.
  
     0.428
Snas_2695
Transcriptional regulator, AraC family; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mlo:mlr1196 transcriptional regulator.
  
     0.423
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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