STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_2227Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: lch:Lcho_0726 transcriptional regulator. (129 aa)    
Predicted Functional Partners:
Snas_2229
Hypothetical protein.
 
    0.928
Snas_2228
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: swd:Swoo_4862 ABC transporter related.
 
    0.915
Snas_4491
TIGRFAM: cytidyltransferase-related domain protein; KEGG: pmy:Pmen_1542 ATPase/kinase involved in NAD metabolism-like protein.
   
    0.770
Snas_2570
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: xac:XAC1547 ABC transporter ATP-binding protein.
 
  
 0.713
Snas_2569
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: xcc:XCC1500 GntR family transcriptional regulator.
  
     0.544
Snas_2226
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: sme:SM_b20607 hypothetical protein.
       0.529
Snas_2230
PFAM: protein of unknown function DUF885; KEGG: scl:sce1630 hypothetical protein.
       0.500
Snas_0723
PFAM: protein of unknown function DUF179; KEGG: scl:sce6809 hypothetical protein; Belongs to the UPF0301 (AlgH) family.
   
    0.414
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.