STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_2326TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; KEGG: bja:blr0927 protocatechuate 3,4-dioxygenase beta chain. (235 aa)    
Predicted Functional Partners:
Snas_2325
KEGG: bja:blr0928 protocatechuate 3,4-dioxygenase alpha chain; TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase.
 
 
0.998
Snas_2324
PFAM: fumarate lyase; KEGG: xca:xccb100_0395 3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.997
Snas_2322
KEGG: spe:Spro_2504 4-carboxymuconolactone decarboxylase; TIGRFAM: 4-carboxymuconolactone decarboxylase; PFAM: Carboxymuconolactone decarboxylase.
 
  
 0.979
Snas_2327
3-oxoadipate CoA-transferase; PFAM: coenzyme A transferase; KEGG: xcv:XCV0379 glutaconate CoA transferase subunit B.
 
  
 0.935
Snas_2323
PFAM: alpha/beta hydrolase fold; KEGG: met:M446_4655 3-oxoadipate enol-lactonase.
 
   
 0.921
Snas_2328
3-oxoadipate CoA-transferase; PFAM: coenzyme A transferase; KEGG: pen:PSEEN1163 3-oxoadipate:succinyl-CoA transferase, subunit A.
 
  
 0.913
Snas_2321
KEGG: bur:Bcep18194_B0262 IclR family transcriptional regulator; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR.
 
   
 0.904
Snas_5095
PFAM: Xylose isomerase domain protein TIM barrel; Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pol:Bpro_4496 4-hydroxyphenylpyruvate dioxygenase.
 
   
 0.802
Snas_2330
PFAM: NMT1/THI5 like domain protein; KEGG: mes:Meso_3542 NlpA lipoprotein.
 
     0.607
aroE
Shikimate dehydrogenase substrate binding domain protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
 
   
 0.596
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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