STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_2435PFAM: GHMP kinase; KEGG: mlo:mlr9540 hypothetical protein. (332 aa)    
Predicted Functional Partners:
Snas_2438
PFAM: protein of unknown function DUF201; ATP- dependent carboxylate-amine ligase domain protein ATP- grasp; KEGG: rhi:NGR234_331 Y4rH.
 
   
 0.891
Snas_2436
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bph:Bphy_7479 pyridoxal-5'-phosphate- dependent protein beta subunit.
     0.836
Snas_2437
PFAM: fumarate lyase; KEGG: bpl:BURPS1106A_2022 argininosuccinate lyase.
       0.802
Snas_2432
Amidohydrolase; KEGG: bbt:BBta_2982 putative amidohydrolase family protein; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein.
       0.773
Snas_2433
KEGG: bph:Bphy_3137 hypothetical protein.
       0.773
Snas_2434
PFAM: Na+/solute symporter; KEGG: bxe:Bxe_B1295 SSS family Na(+)/monocarboxylate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.773
Snas_2439
PFAM: formyl transferase domain protein; KEGG: bvi:Bcep1808_5168 formyl transferase domain- containing protein.
       0.773
Snas_2440
TIGRFAM: RarD protein, DMT superfamily transporter; PFAM: protein of unknown function DUF6 transmembrane; KEGG: dde:Dde_1350 RarD protein.
       0.773
cobQ
Cobyric acid synthase CobQ; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
 
  
 0.545
Snas_2431
PFAM: regulatory protein TetR; KEGG: bid:Bind_2514 TetR family transcriptional regulator.
       0.543
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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