STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_2535Transcriptional regulator, PucR family; PFAM: purine catabolism PurC domain protein; KEGG: pag:PLES_34081 putative regulatory protein. (505 aa)    
Predicted Functional Partners:
Snas_2534
KEGG: rpe:RPE_1661 4-diphosphocytidyl-2C-methyl-D- erythritol synthase.
     
 0.783
Snas_2539
PFAM: molybdopterin dehydrogenase FAD-binding; KEGG: smd:Smed_4005 molybdopterin dehydrogenase FAD- binding.
 
   
 0.723
Snas_2542
TIGRFAM: xanthine dehydrogenase D subunit; PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: sfu:Sfum_2012 aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding.
 
   
 0.670
Snas_2538
Urate oxidase; Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.
 
  
 0.609
Snas_2540
PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: scl:sce5894 hypothetical protein.
     
 0.572
Snas_2537
Hydroxyisourate hydrolase; KEGG: csa:Csal_0101 transthyretin; TIGRFAM: hydroxyisourate hydrolase; PFAM: Transthyretin; SMART: Transthyretin; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.
     
 0.529
Snas_2536
TIGRFAM: OHCU decarboxylase; KEGG: scl:sce5877 putative bifunctional allantoicase/OHCU decarboxylase.
  
  
 0.524
Snas_2541
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: ppw:PputW619_3055 hydroxydechloroatrazine ethylaminohydrolase.
       0.518
Snas_1854
KEGG: pap:PSPA7_0575 hypothetical protein.
  
     0.513
Snas_1147
PFAM: protein of unknown function DUF742.
  
     0.450
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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