STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_2657PFAM: chitin-binding domain 3 protein; KEGG: hch:HCH_03973 N-acetylglucosamine-binding protein A. (201 aa)    
Predicted Functional Partners:
Snas_6397
Chitinase; KEGG: sml:Smlt0682 chitinase A; PFAM: glycoside hydrolase family 18; SMART: chitinase II; Belongs to the glycosyl hydrolase 18 family.
   
 0.744
Snas_4053
PFAM: glycoside hydrolase family 18; SMART: chitinase II; KEGG: hch:HCH_05453 chitinase; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.723
Snas_4306
Chitinase; KEGG: hch:HCH_01137 chitinase; PFAM: glycoside hydrolase family 18; chitinase domain protein; Carbohydrate-binding family V/XII; SMART: chitinase II; Carbohydrate-binding family V/XII.
 
  
 0.672
Snas_0735
PFAM: glycoside hydrolase family 18; SMART: chitinase II; KEGG: cja:CJA_2993 endo-chitinase, putative, chi18C; Belongs to the glycosyl hydrolase 18 family.
 
  
 0.649
Snas_4884
Chitinase; PFAM: glycoside hydrolase family 19; KEGG: cja:CJA_0996 chitinase, putative, chi19A.
 
   
 0.618
Snas_4160
PFAM: glycoside hydrolase family 18; Fibronectin type III domain protein; cellulose-binding family II; SMART: chitinase II; cellulose-binding family II; Fibronectin type III domain protein; KEGG: smt:Smal_0542 glycoside hydrolase family 18.
  
 0.573
Snas_2658
Hypothetical protein; KEGG: cak:Caul_3132 xylan 1,4-beta-xylosidase.
  
  
 0.510
Snas_2656
Hypothetical protein.
       0.507
Snas_2317
PFAM: peptidase S1 and S6 chymotrypsin/Hap; peptidase alpha-lytic pro domain; Carbohydrate-binding family V/XII; SMART: Carbohydrate-binding family V/XII; KEGG: hypothetical protein.
  
     0.430
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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