STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_2886TIGRFAM: L-ribulokinase; PFAM: carbohydrate kinase FGGY; KEGG: lch:Lcho_3201 L-ribulokinase; Belongs to the ribulokinase family. (556 aa)    
Predicted Functional Partners:
Snas_2888
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
 0.999
Snas_2887
PFAM: class II aldolase/adducin family protein; KEGG: ecz:ECS88_4784 L-ribulose 5-phosphate 4- epimerase.
 
 
 0.996
Snas_3280
Putative L-arabinose isomerase protein; Catalyzes the conversion of L-arabinose to L-ribulose.
  
 
 0.984
Snas_4080
PFAM: carbohydrate kinase FGGY; KEGG: bra:BRADO4802 putative carbohydrate kinase.
 
 
 0.951
Snas_2592
KEGG: RPE2; ribulose phosphate-3-epimerase; K01783 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
   
 0.915
Snas_4071
TIGRFAM: ribose 5-phosphate isomerase; sugar- phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; KEGG: hypothetical protein; K01808 ribose 5- phosphate isomerase B.
 
  
  0.830
Snas_3887
PFAM: PfkB domain protein; KEGG: rpi:Rpic_0690 PfkB domain protein.
     
 0.807
Snas_4929
TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; KEGG: sme:SM_b20371 ribose-5-phosphate isomerase B.
    
  0.806
Snas_5443
TIGRFAM: ribose 5-phosphate isomerase; sugar- phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase; KEGG: sun:SUN_0662 ribose-5-phosphate isomerase B.
    
  0.806
Snas_0003
TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase domain protein; KEGG: mno:Mnod_7446 6-phosphogluconate dehydrogenase, decarboxylating.
     
  0.800
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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