Snas_3035 protein (Stackebrandtia nassauensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Snas_3035

KEGG: hypothetical protein. (319 aa)

Predicted Functional Partners:

Snas_3034

0.718

Snas_3801

0.547

Snas_3036

0.542

Snas_3033

0.493

Your Current Organism:

Stackebrandtia nassauensis

NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728

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... functional annotations:

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
Snas_3033	Snas_3034	Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.	KEGG: atc:AGR_C_1212 hypothetical protein.	0.601
Snas_3033	Snas_3035	Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.	KEGG: hypothetical protein.	0.493
Snas_3034	Snas_3033	KEGG: atc:AGR_C_1212 hypothetical protein.	Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.	0.601
Snas_3034	Snas_3035	KEGG: atc:AGR_C_1212 hypothetical protein.	KEGG: hypothetical protein.	0.718
Snas_3034	Snas_3036	KEGG: atc:AGR_C_1212 hypothetical protein.	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: mxa:MXAN_0774 short chain dehydrogenase/reductase family oxidoreductase.	0.504
Snas_3035	Snas_3033	KEGG: hypothetical protein.	Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.	0.493
Snas_3035	Snas_3034	KEGG: hypothetical protein.	KEGG: atc:AGR_C_1212 hypothetical protein.	0.718
Snas_3035	Snas_3036	KEGG: hypothetical protein.	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: mxa:MXAN_0774 short chain dehydrogenase/reductase family oxidoreductase.	0.542
Snas_3035	Snas_3801	KEGG: hypothetical protein.	Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; NB-ARC domain protein; transcriptional regulator domain protein; SMART: Tetratricopeptide domain protein; KEGG: bac:BamMC406_5597 transcriptional regulator.	0.547
Snas_3036	Snas_3034	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: mxa:MXAN_0774 short chain dehydrogenase/reductase family oxidoreductase.	KEGG: atc:AGR_C_1212 hypothetical protein.	0.504
Snas_3036	Snas_3035	PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: mxa:MXAN_0774 short chain dehydrogenase/reductase family oxidoreductase.	KEGG: hypothetical protein.	0.542
Snas_3801	Snas_3035	Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; NB-ARC domain protein; transcriptional regulator domain protein; SMART: Tetratricopeptide domain protein; KEGG: bac:BamMC406_5597 transcriptional regulator.	KEGG: hypothetical protein.	0.547

Network Stats

number of nodes:

11

number of edges:

37

average node degree:

6.73

avg. local clustering coefficient:

0.86

expected number of edges:

11

PPI enrichment p-value:

7.2e-10

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
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Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0007018

Microtubule-based movement

7 of 32

2.29

5.16

1.09e-11

GO:0007017

Microtubule-based process

8 of 78

1.96

4.38

1.09e-11

GO:0010970

Transport along microtubule

5 of 15

2.47

4.07

1.16e-08

GO:0051293

Establishment of spindle localization

4 of 11

2.51

3.29

5.33e-07

GO:0000226

Microtubule cytoskeleton organization

6 of 63

1.93

3.26

2.70e-08

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0045505

Dynein intermediate chain binding

3 of 3

2.95

2.46

3.27e-05

GO:0045504

Dynein heavy chain binding

2 of 2

2.95

1.36

0.0035

GO:0005515

Protein binding

8 of 756

0.97

0.92

0.00014

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0030286

Dynein complex

6 of 7

2.88

6.6

3.39e-13

GO:0005875

Microtubule associated complex

7 of 23

2.43

6.04

3.39e-13

GO:0005868

Cytoplasmic dynein complex

4 of 4

2.95

4.33

1.03e-08

GO:0005874

Microtubule

5 of 58

1.88

2.74

6.03e-07

GO:0005856

Cytoskeleton

8 of 239

1.47

2.4

6.59e-09

(more ...)

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2858

Cytoplasmic dynein complex

5 of 5

2.95

5.14

2.87e-10

CL:3916

Dynactin complex, and F-actin capping protein complex

4 of 11

2.51

3.38

3.59e-07

CL:3919

Dynactin complex

2 of 5

2.55

1.33

0.0036

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map04145

Phagosome

3 of 64

1.62

1.02

0.0073

map05132

Salmonella infection

2 of 21

1.93

0.87

0.0216

map04144

Endocytosis

3 of 172

1.19

0.59

0.0420

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-6811436

COPI-independent Golgi-to-ER retrograde traffic

4 of 13

2.43

3.16

8.44e-07

MAP-6807878

COPI-mediated anterograde transport

5 of 46

1.98

2.81

8.44e-07

MAP-3371497

HSP90 chaperone cycle for steroid hormone receptors (SHR) in the presence of ligand

4 of 31

2.06

2.56

5.29e-06

MAP-199977

ER to Golgi Anterograde Transport

5 of 81

1.74

2.3

3.29e-06

MAP-948021

Transport to the Golgi and subsequent modification

5 of 86

1.71

2.25

3.76e-06

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0030286

Dynein complex

6 of 8

2.82

6.32

1.02e-12

GOCC:0005875

Microtubule associated complex

7 of 69

1.95

4.09

1.02e-10

GOCC:0015630

Microtubule cytoskeleton

9 of 159

1.7

3.7

1.85e-12

GOCC:0005856

Cytoskeleton

10 of 239

1.57

3.25

1.02e-12

GOCC:0035974

Meiotic spindle pole body

2 of 3

2.77

1.54

0.0016

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0206

Cytoskeleton

2 of 16

2.04

0.74

0.0409

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF12455

Dynein associated protein

2 of 2

2.95

1.19

0.0070

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR022157

Dynein associated protein

2 of 2

2.95

0.95

0.0193

IPR036859

CAP Gly-rich domain superfamily

2 of 5

2.55

0.81

0.0336

IPR000938

CAP Gly-rich domain

2 of 5

2.55

0.81

0.0336

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM01052

Cytoskeleton-associated proteins (CAPs) are involved in the organisation of microtubules and transportation of vesicles and organelles along the cytoskeletal network. A conserved motif, CAP-Gly, has been identified in a number of CAPs, including ...

2 of 5

2.55

1.15

0.0078

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