STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_3078PFAM: protein of unknown function DUF402. (220 aa)    
Predicted Functional Partners:
Snas_1832
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: mxa:MXAN_0560 penicillin-resistant dd- carboxypeptidase.
  
     0.560
Snas_3077
Hypothetical protein.
       0.536
Snas_1599
PFAM: cell divisionFtsK/SpoIIIE; KEGG: bpt:Bpet4245 hypothetical protein.
  
     0.480
Snas_0711
Hypothetical protein.
  
     0.459
Snas_3999
ATPase involved in chromosome partitioning-like protein; KEGG: bph:Bphy_5323 response regulator receiver protein.
  
     0.443
Snas_0157
PFAM: cell divisionFtsK/SpoIIIE; KEGG: dac:Daci_4199 cell divisionFtsK/SpoIIIE.
  
     0.426
Snas_6465
Hypothetical protein.
  
     0.425
Snas_6128
KEGG: rso:RSc1273 putative lipoprotein; Belongs to the ComB family.
  
     0.423
Snas_5769
PFAM: alpha/beta hydrolase fold; KEGG: mlo:mlr7232 hypothetical protein.
  
     0.420
Snas_6096
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: avi:Avi_1744 hypothetical protein.
  
     0.415
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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