STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_3125PFAM: carbohydrate kinase FGGY; KEGG: hch:HCH_02472 sugar (pentulose and hexulose) kinase; Belongs to the FGGY kinase family. (498 aa)    
Predicted Functional Partners:
Snas_2592
KEGG: RPE2; ribulose phosphate-3-epimerase; K01783 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
  
 0.928
Snas_2887
PFAM: class II aldolase/adducin family protein; KEGG: ecz:ECS88_4784 L-ribulose 5-phosphate 4- epimerase.
  
 
 0.927
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: ppw:PputW619_2036 xylulokinase.
 
  
 
0.927
xylA
KEGG: cbc:CbuK_0541 xylose isomerase; TIGRFAM: xylose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; Belongs to the xylose isomerase family.
  
 
 0.927
Snas_3126
PFAM: L-fucose isomerase _2 domain protein; L- fucose isomerase-like-like; L-fucose isomerase _1 domain protein; KEGG: hip:CGSHiEE_02050 L-fucose isomerase.
 
  
 0.921
Snas_4064
PFAM: carbohydrate kinase FGGY; KEGG: bmj:BMULJ_04731 gluconokinase; Belongs to the FGGY kinase family.
  
  
 
0.917
Snas_3127
PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: pfl:PFL_2104 ribose operon repressor.
 
 
   0.691
Snas_3262
PFAM: Gluconate transporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: csa:Csal_3175 gluconate transporter.
 
  
 0.465
Snas_4065
PFAM: FAD dependent oxidoreductase; KEGG: vei:Veis_2018 FAD dependent oxidoreductase; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 0.425
Snas_3258
KEGG: scl:sce3321 hypothetical protein.
 
     0.423
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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