STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_3129PFAM: inner-membrane translocator; KEGG: pna:Pnap_2604 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. (335 aa)    
Predicted Functional Partners:
Snas_3621
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bxe:Bxe_B0894 ABC sugar transporter, periplasmic ligand binding protein.
 0.997
Snas_3130
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: bxe:Bxe_B0894 ABC sugar transporter, periplasmic ligand binding protein.
 0.996
Snas_3128
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_B0892 ABC sugar transporter, ATPase subunit.
 0.993
Snas_3623
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bxe:Bxe_B0892 ABC sugar transporter, ATPase subunit.
 0.973
rbsA
ABC transporter related protein; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
 
 0.930
Snas_4656
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: lhk:LHK_01712 RbsA.
 
 0.922
Snas_2890
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rlt:Rleg2_2913 ABC transporter related.
 
 0.908
Snas_3622
PFAM: inner-membrane translocator; KEGG: pna:Pnap_2604 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
  
 
0.901
Snas_1125
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rle:pRL100463 putative ATP-binding component of ABC transporter.
 
 0.860
Snas_3702
TIGRFAM: rhamnose ABC transporter, periplasmic rhamnose-binding protein; KEGG: bxe:Bxe_B1038 ABC sugar transporter, periplasmic ligand binding protein.
 
 0.854
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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