STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_3445TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); KEGG: scl:sce4579 hydrogenase expression/formation protein. (83 aa)    
Predicted Functional Partners:
Snas_3444
TIGRFAM: hydrogenase expression/formation protein HypD; PFAM: hydrogenase formation HypD protein; KEGG: scl:sce4580 hydrogenase expression/formation protein hypD2.
 
 
 0.999
Snas_3443
TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; KEGG: rme:Rmet_1281 hydrogenase expression/formation protein HypE.
 
 
 0.997
Snas_3446
TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: SUA5/yciO/yrdC domain; acylphosphatase; zinc finger HypF domain protein; KEGG: gsu:GSU0306 hydrogenase maturation protein HypF.
 
 
 0.976
Snas_3447
PFAM: UspA domain protein; KEGG: aeh:Mlg_0315 UspA domain-containing protein.
       0.773
Snas_3448
PFAM: CoA-binding domain protein; GCN5-related N- acetyltransferase; KEGG: gbm:Gbem_1414 CoA-binding domain protein.
   
   0.761
Snas_3449
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: ade:Adeh_2259 cation transporting P-type ATPase.
       0.748
Snas_3450
Hypothetical protein.
       0.737
Snas_3451
PFAM: UspA domain protein; KEGG: hha:Hhal_2190 UspA domain-containing protein.
       0.726
Snas_3432
TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein; KEGG: tgr:Tgr7_1139 hydrogenase maturation protease.
 
  
 0.652
Snas_3474
PFAM: nickel-dependent hydrogenase large subunit; KEGG: tgr:Tgr7_1138 nickel-dependent hydrogenase large subunit.
 
   
 0.619
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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