STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_3540Hypothetical protein. (201 aa)    
Predicted Functional Partners:
Snas_3539
Transcriptional regulator, ArsR family; PFAM: Protein-tyrosine phosphatase, low molecular weight; regulatory protein ArsR; SMART: Protein-tyrosine phosphatase, low molecular weight; regulatory protein ArsR; regulatory protein MarR; KEGG: rsp:RSP_4210 ArsR family transcriptional regulator.
       0.746
Snas_3536
PFAM: YCII-related; KEGG: bja:bll6613 hypothetical protein.
       0.532
Snas_3537
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: psa:PST_0150 probable sigma-70 factor, ECF subfamily.
       0.532
Snas_3538
Hypothetical protein.
       0.532
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.