STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_3884Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; Tetratricopeptide TPR_4; TPR repeat-containing protein; NB- ARC domain protein; transcriptional regulator domain protein; SMART: Tetratricopeptide domain protein; KEGG: ade:Adeh_3289 SARP family transcriptional regulator. (990 aa)    
Predicted Functional Partners:
Snas_3482
KEGG: afw:Anae109_3667 ATPase-like protein.
  
    0.722
def-2
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.542
Snas_1147
PFAM: protein of unknown function DUF742.
  
     0.534
Snas_0476
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: mno:Mnod_0475 transcriptional regulator, LuxR family.
  
    0.528
Snas_5827
Triacylglycerol lipase; KEGG: Fibronectin type III domain protein.
  
     0.521
Snas_3216
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: bbt:BBta_1892 transcriptional regulator.
  
    0.503
Snas_5233
Hypothetical protein.
  
    0.503
Snas_0315
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR; KEGG: ank:AnaeK_3528 transcriptional regulator, LuxR family.
  
    0.499
Snas_0794
PFAM: transcriptional regulator TrmB; SMART: regulatory protein LuxR; KEGG: ank:AnaeK_0902 two component transcriptional regulator, LuxR family.
  
     0.498
Snas_2412
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: hypothetical protein.
  
     0.495
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.