STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_3910KEGG: contains peptide methionine sulfoxide reductase SelR domain, specific for methionine-R- sulfoxides; similar to S. cerevisiae orf YCL033C; TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B. (133 aa)    
Predicted Functional Partners:
msrA
Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
 
 0.997
Snas_0956
KEGG: scl:sce5744 hypothetical protein; TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; protein of unknown function DUF6 transmembrane.
 
 0.934
Snas_0827
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: maq:Maqu_1818 redoxin domain-containing protein.
   
 0.810
Snas_1070
PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Thioredoxin domain; Redoxin domain protein; KEGG: mxa:MXAN_3252 thiol:disulfide interchange protein DsbE.
   
 0.810
Snas_3911
PFAM: GCN5-related N-acetyltransferase; KEGG: aha:AHA_0429 acetyltransferase.
       0.707
Snas_5310
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 
 0.649
rplT
Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
   
 
 0.639
rpmJ
TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: amc:MADE_00959 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
    
 
 0.578
rpmG
TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: dds:Ddes_1629 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
    
 
 0.563
rpsI
PFAM: ribosomal protein S9; KEGG: dvm:DvMF_0970 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
   0.559
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.