STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_4081PFAM: short-chain dehydrogenase/reductase SDR; KEGG: reh:H16_B1990 putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (255 aa)    
Predicted Functional Partners:
Snas_3678
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bra:BRADO6558 putative short-chain dehydrogenases/reductase.
  
     0.765
Snas_0101
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bxe:Bxe_B2739 short-chain dehydrogenase/reductase SDR.
  
     0.691
Snas_5862
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mxa:MXAN_0865 short chain dehydrogenase/reductase family oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.689
Snas_5559
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: mlo:mll2041 short chain oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.679
Snas_4082
PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_B2529 TetR family transcriptional regulator.
       0.559
Snas_4080
PFAM: carbohydrate kinase FGGY; KEGG: bra:BRADO4802 putative carbohydrate kinase.
  
    0.529
Snas_4079
PFAM: Phosphoglycerate mutase; KEGG: rme:Rmet_0420 phosphoglycerate mutase.
       0.522
Snas_4074
Transcriptional regulator, DeoR family; PFAM: regulatory protein DeoR; Helix-turn-helix type 11 domain protein; SMART: regulatory protein DeoR; KEGG: sme:SMc01615 putative transcription regulator protein.
  
    0.516
Snas_4083
PFAM: GCN5-related N-acetyltransferase; KEGG: tdn:Suden_0134 GCN5-related N- acetyltransferase.
       0.454
Snas_4133
PFAM: Acyl transferase; Beta-ketoacyl synthase; Erythronolide synthase docking; Thioesterase; phosphopantetheine-binding; KEGG: eca:ECA0603 type I polyketide synthase.
  
 
 0.438
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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