STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_4112TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: bpt:Bpet1259 sodium/alanine symporter family protein. (481 aa)    
Predicted Functional Partners:
Snas_0389
Sodium/proline symporter; Catalyzes the sodium-dependent uptake of extracellular L- proline; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
  
 0.733
Snas_4113
PFAM: Aldehyde Dehydrogenase; KEGG: ccs:CCNA_02881 oxoglutarate semialdehyde dehydrogenase.
  
    0.702
Snas_4111
PFAM: proline racemase; KEGG: proline racemase; Belongs to the proline racemase family.
       0.532
Snas_4110
PFAM: dihydrodipicolinate synthetase; KEGG: swd:Swoo_2822 dihydrodipicolinate synthetase; Belongs to the DapA family.
  
    0.425
Snas_4108
PFAM: ferredoxin; KEGG: bmj:BMULJ_05532 uncharacterized NAD(FAD)- dependent dehydrogenase.
       0.418
Snas_4109
PFAM: BFD domain protein [2Fe-2S]-binding domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: bgl:bglu_2g03820 oxidoreductase, putative.
       0.418
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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