STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_4247PFAM: helix-turn-helix domain protein; protein of unknown function DUF397; SMART: helix-turn-helix domain protein; KEGG: bmn:BMA10247_A1410 DNA-binding protein; SNP; SNP. (410 aa)    
Predicted Functional Partners:
Snas_5736
PFAM: protein of unknown function DUF397.
 
   
 0.804
Snas_0787
PFAM: protein of unknown function DUF397.
 
   
 0.794
Snas_3369
PFAM: protein of unknown function DUF574; KEGG: scl:sce6070 hypothetical protein.
  
     0.774
Snas_4317
Hypothetical protein.
  
     0.768
Snas_5738
PFAM: protein of unknown function DUF574; KEGG: scl:sce6070 hypothetical protein.
  
     0.768
Snas_1147
PFAM: protein of unknown function DUF742.
  
     0.750
Snas_2844
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: azo:azo0263 two-component system histidine kinase.
  
     0.742
Snas_4878
PFAM: protein of unknown function DUF901; KEGG: cak:Caul_3733 peptidase M56 BlaR1.
  
     0.739
Snas_3692
PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: mex:Mext_3893 nitrate and nitrite sensing domain-containing protein.
  
     0.737
Snas_4130
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: dvm:DvMF_1114 methyl-accepting chemotaxis sensory transducer.
  
     0.735
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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