STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_4471Hypothetical protein; KEGG: noc:Noc_A0008 endonuclease/exonuclease/phosphatase. (155 aa)    
Predicted Functional Partners:
Snas_6486
Ribonuclease P protein; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.611
Snas_4994
Hypothetical protein.
  
     0.578
Snas_4470
PFAM: GCN5-related N-acetyltransferase; KEGG: maq:Maqu_1034 ribosomal-protein-alanine acetyltransferase.
       0.515
Snas_0791
PFAM: protein of unknown function DUF88; KEGG: rhi:NGR234_267 Y4oD.
  
     0.503
Snas_2103
PFAM: Propeptide PepSY amd peptidase M4; KEGG: MBCDH22; hypothetical protein.
  
     0.480
Snas_3560
SMART: Integrin alpha beta-propellor repeat protein; KEGG: scl:sce5660 hypothetical protein.
  
     0.463
Snas_5395
PFAM: fatty acid hydroxylase; KEGG: cak:Caul_2304 fatty acid hydroxylase.
  
    0.450
Snas_0945
PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: ara:Arad_4162 polysaccharide biosynthesis associated protein.
  
    0.433
Snas_4469
Hypothetical protein.
       0.427
Snas_3807
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
     
 0.415
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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