STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_4543PFAM: peptidase M56 BlaR1; KEGG: scl:sce6609 hypothetical protein. (315 aa)    
Predicted Functional Partners:
Snas_4544
PFAM: Penicillinase repressor; KEGG: cak:Caul_3732 CopY family transcriptional regulator.
 
    0.958
Snas_4745
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: mxa:MXAN_0190 hypothetical protein.
 
    0.820
Snas_4545
RNA polymerase, sigma 70 subunit, RpoD subfamily; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.516
Snas_4277
PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: mxa:MXAN_5205 methylated-DNA-[protein]- cysteine S-methyltransferase family protein.
  
     0.438
Snas_4312
KEGG: dal:Dalk_3379 D-3-phosphoglycerate dehydrogenase; TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein.
 
    0.419
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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