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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_4635PFAM: major facilitator superfamily MFS_1; KEGG: rle:RL3147 putative transmembrane transporter. (437 aa)    
Predicted Functional Partners:
Snas_6370
Hypothetical protein.
  
     0.660
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
     0.635
Snas_4003
Hypothetical protein; KEGG: similar to splicing coactivator subunit SRm300.
  
     0.618
Snas_4636
PFAM: globin; KEGG: pna:Pnap_2346 globin.
       0.588
Snas_4442
KEGG: Hypothetical protein CBG10899.
  
     0.575
Snas_4634
PFAM: MscS Mechanosensitive ion channel; KEGG: sat:SYN_02629 mechanosensitive ion channel.
       0.511
Snas_3148
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
     0.466
Snas_3098
PFAM: sporulation and cell division protein SsgA.
  
     0.456
Snas_3979
PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: dol:Dole_2836 lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA.
  
     0.444
Snas_4637
PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: ilo:IL2337 aminopeptidase M1 family protein.
       0.438
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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