STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_4871Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: maq:Maqu_3089 two component LuxR family transcriptional regulator. (222 aa)    
Predicted Functional Partners:
Snas_4870
KEGG: tgr:Tgr7_2170 GAF sensor signal transduction histidine kinase; PFAM: histidine kinase dimerisation and phosphoacceptor region; GAF domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein.
 
   0.950
Snas_4869
PFAM: AMP-dependent synthetase and ligase; KEGG: afw:Anae109_0968 AMP-dependent synthetase and ligase.
       0.591
Snas_0536
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: ccs:CCNA_01208 two-component response regulator.
  
     0.549
Snas_2593
PFAM: response regulator receiver; GGDEF domain containing protein; SMART: response regulator receiver; GGDEF domain containing protein; KEGG: mxa:MXAN_4445 sensory box histidine kinase/response regulator.
  
    0.485
Snas_1064
Adenylate/guanylate cyclase with TPR repeats; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; Tetratricopeptide TPR_4; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; Tetratricopeptide domain protein; KEGG: rec:RHECIAT_CH0002196 putative adenylate/guanylate cyclase protein.
 
 
   0.463
Snas_2204
KEGG: similar to Cpsf6 protein.
  
     0.445
Snas_4866
TIGRFAM: glucokinase, ROK family; PFAM: ROK family protein; KEGG: ara:Arad_9637 transcriptional regulator protein.
       0.418
Snas_4867
PFAM: cyclase/dehydrase; KEGG: ade:Adeh_1641 cyclase/dehydrase.
       0.418
Snas_4868
Hypothetical protein.
       0.418
Snas_1053
GAF sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; GAF domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; GAF domain protein; histidine kinase HAMP region domain protein; KEGG: scl:sce7807 hypothetical protein.
   
 
 0.413
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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