STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_4974PFAM: regulatory protein TetR; KEGG: smt:Smal_2152 transcriptional regulator, TetR family. (186 aa)    
Predicted Functional Partners:
Snas_4975
PFAM: small multidrug resistance protein; KEGG: dal:Dalk_0650 small multidrug resistance protein.
 
     0.809
Snas_4976
PFAM: small multidrug resistance protein; KEGG: afr:AFE_2802 multidrug resistance protein, SMR family.
       0.778
Snas_5248
PFAM: regulatory protein TetR; KEGG: bur:Bcep18194_B0953 TetR family transcriptional regulator.
  
     0.755
Snas_4977
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein Crp; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: sat:SYN_00574 cAMP-dependent transcriptional regulator.
       0.506
Snas_4973
PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: psp:PSPPH_1370 xenobiotic reductase, putative.
  
    0.493
Snas_3346
Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: atc:AGR_pAT_269 hypothetical protein.
  
     0.414
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.