STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_5151Hypothetical protein. (218 aa)    
Predicted Functional Partners:
Snas_5150
PFAM: beta-lactamase; KEGG: cja:CJA_2859 beta-lactamase.
       0.773
Snas_5152
Transcriptional regulator, LuxR family; TIGRFAM: RNA polymerase sigma-70 factor, sigma-E family; RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; regulatory protein LuxR; sigma-70 region 4 domain protein; KEGG: xop:PXO_02865 ECF sigma factor.
       0.773
Snas_5149
PFAM: oxidoreductase domain protein; homoserine dehydrogenase NAD-binding; Oxidoreductase domain; KEGG: mmw:Mmwyl1_3508 oxidoreductase domain- containing protein.
       0.553
Snas_5153
PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: shl:Shal_1161 C4-dicarboxylate transporter/malic acid transport protein.
       0.509
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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