STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_5360Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; TPR repeat- containing protein; NB-ARC domain protein; transcriptional regulator domain protein; SMART: Tetratricopeptide domain protein; KEGG: scl:sce3550 hypothetical protein. (913 aa)    
Predicted Functional Partners:
Snas_4491
TIGRFAM: cytidyltransferase-related domain protein; KEGG: pmy:Pmen_1542 ATPase/kinase involved in NAD metabolism-like protein.
   
    0.753
Snas_2412
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: hypothetical protein.
 
     0.749
Snas_5233
Hypothetical protein.
  
    0.608
Snas_4907
SMART: helix-turn-helix domain protein.
  
    0.594
Snas_3591
RNA polymerase, sigma-24 subunit, ECF subfamily; KEGG: hypothetical LOC574629; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; TPR repeat- containing protein; SMART: Tetratricopeptide domain protein.
 
  
 0.587
Snas_4751
SMART: helix-turn-helix domain protein.
  
    0.587
Snas_0084
Transcriptional regulator, XRE family.
  
     0.577
Snas_2091
Hypothetical protein.
  
    0.577
Snas_4247
PFAM: helix-turn-helix domain protein; protein of unknown function DUF397; SMART: helix-turn-helix domain protein; KEGG: bmn:BMA10247_A1410 DNA-binding protein; SNP; SNP.
  
    0.563
Snas_4415
PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
    0.557
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.