STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ectCEctoine synthase; Catalyzes the circularization of gamma-N-acetyl-alpha,gamma- diaminobutyric acid (ADABA) to ectoine (1,4,5,6-tetrahydro-2-methyl-4- pyrimidine carboxylic acid), which is an excellent osmoprotectant. (139 aa)    
Predicted Functional Partners:
Snas_5814
TIGRFAM: ectoine hydroxylase; PFAM: Phytanoyl-CoA dioxygenase; KEGG: psa:PST_0178 putative L-proline 4-hydroxylase.
 
  
 0.995
ectA
L-2,4-diaminobutyric acid acetyltransferase; Catalyzes the acetylation of L-2,4-diaminobutyrate (DABA) to gamma-N-acetyl-alpha,gamma-diaminobutyric acid (ADABA) with acetyl coenzyme A.
 
  
  0.991
Snas_5812
Diaminobutyrate/2-oxoglutarate aminotransferase; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.982
Snas_3496
PFAM: creatinase; peptidase M24; KEGG: hch:HCH_06289 Xaa-Pro aminopeptidase.
 
  
 0.573
Snas_5815
PFAM: Tetratricopeptide TPR_4; TPR repeat- containing protein; Sel1 domain protein repeat-containing protein; SMART: Tetratricopeptide domain protein; Sel1 domain protein repeat-containing protein; KEGG: hiq:CGSHiGG_00130 Sel1 domain-containing protein.
       0.524
Snas_3392
PFAM: Phytanoyl-CoA dioxygenase; KEGG: pol:Bpro_2862 phytanoyl-CoA dioxygenase.
 
   
 0.507
Snas_5543
PFAM: Phytanoyl-CoA dioxygenase; KEGG: hypothetical protein.
 
   
 0.478
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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