STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_6098PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding domain 1 protein; KEGG: mca:MCA0685 hypothetical protein. (264 aa)    
Predicted Functional Partners:
Snas_1882
KEGG: scl:sce4880 hypothetical protein.
  
     0.734
Snas_1881
KEGG: scl:sce4880 hypothetical protein.
  
     0.729
Snas_3843
PFAM: protein of unknown function DUF214; KEGG: slo:Shew_3202 hypothetical protein.
 
     0.681
Snas_4168
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: CG6016 gene product from transcript CG6016-RA; K00993 ethanolaminephosphotransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
    0.640
Snas_0675
Hypothetical protein.
  
     0.582
Snas_6097
PFAM: Radical SAM domain protein; KEGG: mmw:Mmwyl1_0398 radical SAM domain-containing protein.
       0.533
Snas_1064
Adenylate/guanylate cyclase with TPR repeats; PFAM: adenylyl cyclase class-3/4/guanylyl cyclase; Tetratricopeptide TPR_4; SMART: adenylyl cyclase class-3/4/guanylyl cyclase; Tetratricopeptide domain protein; KEGG: rec:RHECIAT_CH0002196 putative adenylate/guanylate cyclase protein.
 
     0.519
Snas_0987
Hypothetical protein.
  
     0.510
Snas_3022
KEGG: hypothetical protein.
 
     0.499
Snas_3726
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; Tetratricopeptide TPR_4; SMART: regulatory protein LuxR; KEGG: SNF2 superfamily protein.
  
     0.498
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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