STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Snas_6461KEGG: mlo:mll3824 hypothetical protein. (144 aa)    
Predicted Functional Partners:
Snas_6462
PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; KEGG: afw:Anae109_4459 hypothetical protein.
       0.773
Snas_0690
PFAM: protein of unknown function DUF690.
  
     0.647
Snas_0693
TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571; KEGG: rsh:Rsph17029_1067 transport system permease protein.
  
     0.597
Snas_6463
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: pmy:Pmen_0662 glycerophosphodiester phosphodiesterase.
  
    0.560
Snas_0406
TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571; KEGG: GK10816 gene product from transcript GK10816- RA.
  
     0.550
Snas_3405
Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: dac:Daci_5402 transcriptional regulator, TrmB.
  
     0.541
Snas_6459
PFAM: protein of unknown function UPF0016; KEGG: gur:Gura_1174 hypothetical protein.
       0.527
larC
Protein of unknown function DUF111; Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2+), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor-dependent enzymes. Belongs to the LarC family.
       0.527
Snas_0396
PFAM: protein of unknown function DUF690.
  
     0.524
Snas_0990
TIGRFAM: secretion protein snm4; PFAM: protein of unknown function DUF571; KEGG: xau:Xaut_0419 copper resistance D domain- containing protein.
  
     0.519
Your Current Organism:
Stackebrandtia nassauensis
NCBI taxonomy Id: 446470
Other names: S. nassauensis DSM 44728, Stackebrandtia nassauensis DSM 44728, Stackebrandtia nassauensis str. DSM 44728, Stackebrandtia nassauensis strain DSM 44728
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