STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0014PFAM: protein of unknown function DUF881; KEGG: bha:BH2562 hypothetical protein. (257 aa)    
Predicted Functional Partners:
Xcel_1736
PFAM: protein of unknown function DUF1290; KEGG: bha:BH2560 small basic protein.
 
  
 0.874
Xcel_0016
Hypothetical protein.
       0.802
Xcel_0015
PFAM: peptidase C60 sortase A and B; KEGG: sus:Acid_5377 sortase family protein.
       0.798
Xcel_0017
TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: swi:Swit_3227 anthranilate synthase, component II.
       0.752
crgA
Protein of unknown function UPF0233; Involved in cell division; Belongs to the CrgA family.
       0.608
Xcel_2727
PFAM: Transglycosylase domain protein; protein of unknown function DUF348; G5 domain protein; KEGG: bsu:BSU00400 hypothetical protein.
  
     0.538
Xcel_0235
Hypothetical protein.
  
     0.489
Xcel_2726
PFAM: G5 domain protein; protein of unknown function DUF348; KEGG: bha:BH0055 hypothetical protein.
  
     0.487
Xcel_2728
PFAM: Transglycosylase domain protein; protein of unknown function DUF348; G5 domain protein; KEGG: bha:BH0055 hypothetical protein.
  
     0.455
Xcel_0659
KEGG: sil:SPO1241 hypothetical protein.
  
     0.442
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.