STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0027PFAM: Peptidoglycan-binding domain 1 protein; KEGG: gur:Gura_3473 peptidoglycan binding domain- containing protein. (367 aa)    
Predicted Functional Partners:
Xcel_0028
PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; KEGG: gur:Gura_3474 ABC transporter related; Belongs to the ABC transporter superfamily. Macrolide exporter (TC 3.A.1.122) family.
  
    0.789
Xcel_3156
PFAM: protein of unknown function DUF214; KEGG: gur:Gura_3474 ABC transporter related.
 
     0.729
Xcel_0029
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ppg:PputGB1_3064 RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.623
Xcel_0026
Hypothetical protein.
       0.610
Xcel_0816
PFAM: protein of unknown function DUF214; KEGG: gur:Gura_3474 ABC transporter related.
 
     0.567
Xcel_0030
Hypothetical protein.
  
    0.539
Xcel_1590
PFAM: protein of unknown function DUF214; KEGG: gur:Gura_3474 ABC transporter related.
  
     0.516
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.