STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Xcel_0035PFAM: GCN5-related N-acetyltransferase; KEGG: ppf:Pput_3213 GCN5-related N- acetyltransferase. (176 aa)    
Predicted Functional Partners:
Xcel_0034
PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: ppf:Pput_3811 protein tyrosine phosphatase.
       0.639
Xcel_3015
PFAM: GCN5-related N-acetyltransferase; KEGG: bvi:Bcep1808_3667 GCN5-related N- acetyltransferase.
  
   0.566
Xcel_1802
KEGG: csa:Csal_1054 L-lysine 6-monooxygenase (NADPH).
  
  
 0.523
Xcel_2257
TIGRFAM: M6 family metalloprotease domain protein; PFAM: peptidase M6 immune inhibitor A; KEGG: ade:Adeh_0322 peptidase M6, immune inhibitor A.
  
    0.513
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.483
Xcel_0033
PFAM: NmrA family protein; KEGG: nar:Saro_2808 NmrA-like.
  
    0.471
Xcel_0462
KEGG: hypothetical protein.
  
     0.447
Xcel_1927
Hypothetical protein; KEGG: ade:Adeh_1135 serine/threonine protein kinase.
  
    0.418
Your Current Organism:
Xylanimonas cellulosilytica
NCBI taxonomy Id: 446471
Other names: X. cellulosilytica DSM 15894, Xylanimonas cellulosilytica DSM 15894, Xylanimonas cellulosilytica str. DSM 15894, Xylanimonas cellulosilytica strain DSM 15894
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.